Bioinformatics links

A collection of bioinfo links that I like. Note - not really in any order!

• SRA Explorer: Easily search for sequence data by taxon
• Genome browsers - long list - https://github.com/cmdcolin/awesome-genome-visualization
• Software carpentry: intro to unix and git (and more): https://software-carpentry.org/lessons/
• Data carpentry: Genomics https://datacarpentry.org/wrangling-genomics/
• Bioinformatics tutorials: https://isugenomics.github.io/bioinformatics-workbook/
• Ben Langmead’s excellent set of teaching materials for algorithms used in bioinformatics
• Web platform for bioinformatics: Galaxy Australia (other Galaxy servers are also available): https://usegalaxy.org.au/
• Galaxy tutorials, including how to use Galaxy, and how to do a lot of different analyses: https://training.galaxyproject.org/
• Ontology for bioinformatics formats
• Beautiful visualisations of biological processes: WEHI tv and Kate Patterson
• Alignment tool with Alan Partridge in it: https://github.com/mpdunne/alan
• Test your bioinformatics skills at Rosalind
• Ask your bioinformatics questions on SeqAnswers, Bioinformatics StackExchange or Biostars
• Pure Bash Bible - https://github.com/dylanaraps/pure-bash-bible
• Programming Zines by Julia Evans - really nice! - https://wizardzines.com/
• Regexr - online tool to learn, build, & test Regular Expressions
• Rosetta code
• Learn R and Python in parallel
• Enough awk to get by
• Useful bash one-liners useful for bioinformatics
• BioPython